常用生物数据库及数据格式.ppt

文档介绍：常用生物数据库及数据格式PPT模板课件
常用生物数据库和数据格式
文档附赠有可编辑的3D小人素材
基本内容
生物数据库相关背景
常用数据格式
fasta, fastq, gff, GenBank
常用序列数据库
美国国NRQHM"
gene 687..3158
/gene="AXL2"
......
ORIGIN
1 gatcctccat atacaacggt atctccacct caggtttaga tctcaacaac ggaaccattg
61 ccgacatgag acagttaggt atcgtcgaga gttacaagct aaaacgagca gtagtcagct
......
4981 tgccatgact cagattctaa ttttaagcta ttcaatttct ctttgatc
//
*/88
GBFF文件分为三部分：
LOCUS SCU49845 5028 bp DNA linear PLN 21-JUN-1999
DEFINITION Saccharomyces cerevisiae TCP1-beta gene, partial cds; and Axl2p
(AXL2) and Rev7p (REV7) genes, complete cds.
ACCESSION U49845
VERSION GI:1293613
KEYWORDS .
SOURCE Saccharomyces cerevisiae (baker's yeast)
ORGANISM Saccharomyces cerevisiae
Eukaryota; Fungi; Ascomycota; Saccharomycotina; Saccharomycetes;
Saccharomycetales; Saccharomycetaceae; Saccharomyces.
REFERENCE 1 (bases 1 to 5028)
AUTHORS Torpey,., Gibbs,., Nelson,J. and Lawrence,.
TITLE Cloning and sequence of REV7, a gene whose function is required for
DNA damage-induced mutagenesis in Saccharomyces cerevisiae
JOURNAL Yeast 10 (11), 1503-1509 (1994)
PUBMED
FEATURES Location/Qualifiers
CDS <1..206
/codon_start=3
/product="TCP1-beta"
/protein_id=""
/db_xref="GI:1293614"
/translation="SSIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEA
AEVLLRVDNIIRARPRTANRQHM"
gene 687..3158
/gene="AXL2"
......
ORIGIN
1 gatcctccat atacaacggt atctccacct caggtttaga tctcaacaac ggaaccattg
61 ccgacatgag acagttaggt atcgtcgaga gttacaagct aaaacgagca gtagtcagct
......
4981 tgccatgact cagattctaa ttttaagcta ttcaatttct ctttgatc
//